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PDB to FASTA
PDB to FASTA
This tool extracts protein/nucleotide sequences from PDB files.
PDB:
1rv1.pdb
Open PDB file...
Output (FASTA)
>1RV1:A UNP:Q00987 MDM2_HUMAN ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD LFGVPSFSVKEHRKIYTMIYRNLVV >1RV1:B UNP:Q00987 MDM2_HUMAN ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD LFGVPSFSVKEHRKIYTMIYRNLVV >1RV1:C UNP:Q00987 MDM2_HUMAN ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD LFGVPSFSVKEHRKIYTMIYRNLVV
1
>1RV1:A UNP:Q00987 MDM2_HUMAN
2
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
3
LFGVPSFSVKEHRKIYTMIYRNLVV
4
>1RV1:B UNP:Q00987 MDM2_HUMAN
5
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
6
LFGVPSFSVKEHRKIYTMIYRNLVV
7
>1RV1:C UNP:Q00987 MDM2_HUMAN
8
ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD
9
LFGVPSFSVKEHRKIYTMIYRNLVV
10
The extracted FASTA.
Save FASTA as...
PDB to FASTA
See also
1.
ABI to FASTA
Convert AB1 files (Applied Biosystems/ABI trace files) to FASTA format.
2.
FASTA Parse Tree Viewer
Visualize the parse tree of FASTA files.
3.
Sequence Alignment Viewer
Open FASTA files in the browser.
4.
What is FASTA and how is it used?
Learn about the FASTA format and its applications.
5.
GenBank to FASTA
Convert GenBank flat files to FASTA format.
